Tuula A Nyman: search on Z-Library

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1

Hierarchical grid transformation for image warping in the analysis of two-dimensional electrophoresis gels

Jussi Salmi, Tero Aittokallio, Jan Westerholm, Matias Griese, Arsi Rosengren, Tuula A. Nyman, Riitta Lahesmaa, Olli Nevalainen

Journal:

Year:

2002

Language:

english

File:

PDF, 334 KB

english, 2002

2

Comparison of PDQuest and Progenesis software packages in the analysis of two-dimensional electrophoresis gels

Arsi T. Rosengren, Jussi M. Salmi, Tero Aittokallio, Jan Westerholm, Riitta Lahesmaa, Tuula A. Nyman, Olli S. Nevalainen

Journal:

Year:

2003

Language:

english

File:

PDF, 368 KB

english, 2003

3

Growth phase-associated changes in the proteome and transcriptome of Lactobacillus rhamnosus GG in industrial-type whey medium

Kati Laakso, Kerttu Koskenniemi, Johanna Koponen, Matti Kankainen, Anu Surakka, Tuomas Salusjärvi, Petri Auvinen, Kirsi Savijoki, Tuula A. Nyman, Nisse Kalkkinen, Soile Tynkkynen, Pekka Varmanen

Journal:

Microbial Biotechnology

Year:

2011

Language:

english

File:

PDF, 1.29 MB

english, 2011

4

The molecular network of the dyslexia candidate gene DYX1C1 shows connection to neuronal migration genes and cytoskeletal proteins

Tammimies, Kristiina, Vitezic, Morana, Matsson, Hans, Le Guyader, Sylvie, Bürglin, Thomas R., Öhman, Tiina, Strömblad, Staffan, Daub, Carsten O., Nyman, Tuula A., Kere, Juha, Tapia-Páez, Isabel

Journal:

International Journal of Developmental Neuroscience

Year:

2012

Language:

english

File:

PDF, 304 KB

english, 2012

5

Splicing of platelet resident pre-mRNAs upon activation by physiological stimuli results in functionally relevant proteome modifications

Nassa, Giovanni, Giurato, Giorgio, Cimmino, Giovanni, Rizzo, Francesca, Ravo, Maria, Salvati, Annamaria, Nyman, Tuula A., Zhu, Yafeng, Vesterlund, Mattias, Lehtiö, Janne, Golino, Paolo, Weisz, Alessan

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 5.89 MB

english, 2018

6

Multi-Omics Studies towards Novel Modulators of Influenza A Virus–Host Interaction

Söderholm, Sandra, Fu, Yu, Gaelings, Lana, Belanov, Sergey, Yetukuri, Laxman, Berlinkov, Mikhail, Cheltsov, Anton, Anders, Simon, Aittokallio, Tero, Nyman, Tuula, Matikainen, Sampsa, Kainov, Denis

Journal:

Year:

2016

Language:

english

File:

PDF, 3.89 MB

english, 2016

7

A proteome database of human primary T helper cells

Tuula A. Nyman, Arsi Rosengren, Saija Syyrakki, Timo-Pekka Pellinen, Kirsi Rautajoki, Riitta Lahesmaa

Journal:

ELECTROPHORESIS

Year:

2001

Language:

english

File:

PDF, 4.51 MB

english, 2001

8

Determination of nine β-blockers in serum by micellar electrokinetic capillary chromatography

Pekka Lukkari, Tuula Nyman, Marja-Liisa Riekkola

Journal:

Journal of Chromatography A

Year:

1994

Language:

english

File:

PDF, 495 KB

english, 1994

9

The role of mass spectrometry in proteome studies

Journal:

Biomolecular Engineering

Year:

2001

Language:

english

File:

PDF, 242 KB

english, 2001

10

Proteome analysis reveals ubiquitin-conjugating enzymes to be a new family of interferon-α-regulated genes

Tuula A. Nyman, Sampsa Matikainen, Timo Sareneva, Ilkka Julkunen, Nisse Kalkkinen

Journal:

Year:

2000

Language:

english

File:

PDF, 883 KB

english, 2000

11

Identification of foetal brain proteins by two-dimensional gel electrophoresis and mass spectrometry : Comparison of samples from individuals with or without chromosome 21 trisomy

Madalina Oppermann, Neus Cols, Tuula Nyman, Jari Helin, Juhani Saarinen, Irene Byman, Núria Toran, Ayodele A. Alaiya, Tomas Bergman, Nisse Kalkkinen, Roser Gonzàlez-Duarte, Hans Jörnvall

Journal:

Year:

2000

Language:

english

File:

PDF, 479 KB

english, 2000

12

Scots pine expresses short-root-specific peroxidases during development

Mika T. Tarkka, Tuula A. Nyman, Nisse Kalkkinen, Marjatta Raudaskoski

Journal:

Year:

2001

Language:

english

File:

PDF, 700 KB

english, 2001

13

Proteome characterization of human T helper 1 and 2 cells

Kirsi Rautajoki, Tuula A. Nyman, Riitta Lahesmaa

Journal:

Year:

2004

Language:

english

File:

PDF, 189 KB

english, 2004

14

Proteomic and transcriptomic characterization of interferon-α-induced human primary T helper cells

Arsi T. Rosengren, Tuula A. Nyman, Saija Syyrakki, Sampsa Matikainen, Riitta Lahesmaa

Journal:

Year:

2005

Language:

english

File:

PDF, 451 KB

english, 2005

15

Proteome profiling of interleukin-12 treated human T helper cells

Arsi T. Rosengren, Tuula A. Nyman, Riitta Lahesmaa

Journal:

Year:

2005

Language:

english

File:

PDF, 310 KB

english, 2005

16

A comparative evaluation of software for the analysis of liquid chromatography-tandem mass spectrometry data from isotope coded affinity tag experiments

Robert Moulder, Jan-Jonas Filén, Jussi Salmi, Mikko Katajamaa, Olli S. Nevalainen, Matej Oresic, Tero Aittokallio, Riitta Lahesmaa, Tuula A. Nyman

Journal:

Year:

2005

Language:

english

File:

PDF, 311 KB

english, 2005

17

Characterization of microsomal fraction proteome in human lymphoblasts reveals the down-regulation of galectin-1 by interleukin-12

Jan-Jonas Filén, Tuula A. Nyman, Juha Korhonen, David R. Goodlett, Riitta Lahesmaa

Journal:

Year:

2005

Language:

english

File:

PDF, 465 KB

english, 2005

18

Identification of new Golgi complex specific proteins by direct organelle proteomic analysis

Maarit S. Takatalo, Petri Kouvonen, Garry Corthals, Tuula A. Nyman, Ragna H. Rönnholm

Journal:

Year:

2006

Language:

english

File:

PDF, 357 KB

english, 2006

19

Proteome analysis of human macrophages reveals the upregulation of manganese-containing superoxide dismutase after toll-like receptor activation

Riitta Rakkola, Sampsa Matikainen, Tuula A. Nyman

Journal:

Year:

2007

Language:

english

File:

PDF, 419 KB

english, 2007

20

Identification of novel Stat6 regulated proteins in IL-4-treated mouse lymphocytes

Soile Tuomela, Kirsi J. Rautajoki, Robert Moulder, Tuula A. Nyman, Riitta Lahesmaa

Journal:

Year:

2009

Language:

english

File:

PDF, 512 KB

english, 2009

21

Filtering strategies for improving protein identification in high-throughput MS/MS studies

Jussi Salmi, Tuula A. Nyman, Olli S. Nevalainen, Tero Aittokallio

Journal:

Year:

2009

Language:

english

File:

PDF, 322 KB

english, 2009

22

Identification of proteins associated with ligand-activated estrogen receptor α in human breast cancer cell nuclei by tandem affinity purification and nano LC-MS/MS

Roberta Tarallo, Angela Bamundo, Giovanni Nassa, Ernesto Nola, Ornella Paris, Concetta Ambrosino, Angelo Facchiano, Marc Baumann, Tuula A. Nyman, Alessandro Weisz

Journal:

Year:

2011

Language:

english

File:

PDF, 264 KB

english, 2011

23

A large set of estrogen receptor β-interacting proteins identified by tandem affinity purification in hormone-responsive human breast cancer cell nuclei

Giovanni Nassa, Roberta Tarallo, Concetta Ambrosino, Angela Bamundo, Lorenzo Ferraro, Ornella Paris, Maria Ravo, Pietro H. Guzzi, Mario Cannataro, Marc Baumann, Tuula A. Nyman, Ernesto Nola, Alessandr

Journal:

Year:

2011

Language:

english

File:

PDF, 300 KB

english, 2011

24

A large set of estrogen receptor β-interacting proteins identified by tandem affinity purification in hormone-responsive human breast cancer cell nuclei

Giovanni Nassa, Roberta Tarallo, Concetta Ambrosino, Angela Bamundo, Lorenzo Ferraro, Ornella Paris, Maria Ravo, Pietro H. Guzzi, Mario Cannataro, Marc Baumann, Tuula A. Nyman, Ernesto Nola, Alessandr

Journal:

PROTEOMICS - Clinical Applications

Year:

2011

Language:

english

File:

PDF, 537 KB

english, 2011

25

Identification of proteins associated with ligand-activated estrogen receptor α in human breast cancer cell nuclei by tandem affinity purification and nano LC-MS/MS

Roberta Tarallo, Angela Bamundo, Giovanni Nassa, Ernesto Nola, Ornella Paris, Concetta Ambrosino, Angelo Facchiano, Marc Baumann, Tuula A. Nyman, Alessandro Weisz

Journal:

PROTEOMICS - Clinical Applications

Year:

2011

Language:

english

File:

PDF, 324 KB

english, 2011

26

An update on clinical proteomics in Alzheimer’s research

Minna A. Korolainen, Tuula A. Nyman, Tero Aittokallio, Tuula Pirttilä

Journal:

Journal of Neurochemistry

Year:

2010

Language:

english

File:

PDF, 821 KB

english, 2010

27

Development of a Pharmaceutical Apotransferrin Product for Iron Binding Therapy

Leni von Bonsdorff, Hannele Tölö, Enni Lindeberg, Tuula Nyman, Anna Harju, Jaakko Parkkinen

Journal:

Year:

2001

Language:

english

File:

PDF, 253 KB

english, 2001

28

Effect of acid stress on protein expression and phosphorylation in Lactobacillus rhamnosus GG

Johanna Koponen, Kati Laakso, Kerttu Koskenniemi, Matti Kankainen, Kirsi Savijoki, Tuula A. Nyman, Willem M. de Vos, Soile Tynkkynen, Nisse Kalkkinen, Pekka Varmanen

Journal:

Journal of Proteomics

Year:

2012

Language:

english

File:

PDF, 1.40 MB

english, 2012

29

Structural characterisation of N-linked and O-linked oligosaccharides derived from interferon-α2b and interferon-α14c produced by Sendai-virus-induced human peripheral blood leukocytes

Tuula A. Nyman, Nisse Kalkkinen, Hannele Tölö, Jari Helin

Journal:

Year:

1998

Language:

english

File:

PDF, 299 KB

english, 1998

30

Pripper: prediction of caspase cleavage sites from whole proteomes

Mirva Piippo, Niina Lietzén, Olli S Nevalainen, Jussi Salmi, Tuula A Nyman

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 994 KB

english, 2010

31

Comparative analysis of excretory-secretory antigens ofTrichinella spiralisandTrichinella britovimuscle larvae by two-dimensional difference gel electrophoresis and immunoblotting

Justyna Bien, Anu Näreaho, Pekka Varmanen, Katarzyna Gozdzik, Bozena Moskwa, Wladyslaw Cabaj, Tuula A Nyman, Kirsi Savijoki

Journal:

Proteome Science

Year:

2012

Language:

english

File:

PDF, 601 KB

english, 2012

32

Temperature-induced structural transition in-situ in porcine lens — Changes observed in void size distribution

Petri Sane, Filip Tuomisto, Susanne K. Wiedmer, Tuula Nyman, Ilpo Vattulainen, Juha M. Holopainen

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

2010

Language:

english

File:

PDF, 597 KB

english, 2010

33

Proteomic analysis of glial fibrillary acidic protein in Alzheimer's disease and aging brain

Minna A. Korolainen, Seppo Auriola, Tuula A. Nyman, Irina Alafuzoff, Tuula Pirttilä

Journal:

Neurobiology of Disease

Year:

2005

Language:

english

File:

PDF, 714 KB

english, 2005

34

Oxidative modification of proteins in the frontal cortex of Alzheimer's disease brain

Minna A. Korolainen, Gundars Goldsteins, Tuula A. Nyman, Irina Alafuzoff, Jari Koistinaho, Tuula Pirttilä

Journal:

Neurobiology of Aging

Year:

2006

Language:

english

File:

PDF, 347 KB

english, 2006

35

P2-139: Oxidation of cerebrospinal fluid proteins in aging and Alzheimer’s disease

Minna A. Korolainen, Tuula A. Nyman, Paula Nyyssönen, E. Samuel Hartikainen, Tuula Pirttilä

Journal:

Alzheimer's & Dementia

Year:

2006

Language:

english

File:

PDF, 58 KB

english, 2006

36

Striatal Dopamine Synthesis in First-degree Relatives of Patients with Schizophrenia

Jukka Huttunen, Markus Heinimaa, Tanja Svirskis, Mikko Nyman, Jaana Kajander, Sarita Forsback, Olof Solin, Tuula Ilonen, Jyrki Korkeila, Terja Ristkari, Thomas McGlashan, Raimo K.R. Salokangas, Jarmo

Journal:

Biological Psychiatry

Year:

2008

Language:

english

File:

PDF, 235 KB

english, 2008

37

Peroxiredoxins and tropomyosins as plasma biomarkers for lung cancer and asbestos exposure

Rostila, Annina, Puustinen, Anne, Toljamo, Tuula, Vuopala, Katri, Lindström, Irmeli, Nyman, Tuula A., Oksa, Panu, Vehmas, Tapio, Anttila, Sisko L.

Journal:

Year:

2012

Language:

english

File:

PDF, 728 KB

english, 2012

38

A Mitochondrial Ribosomal and RNA Decay Pathway Blocks Cell Proliferation

Richter, Uwe, Lahtinen, Taina, Marttinen, Paula, Myöhänen, Maarit, Greco, Dario, Cannino, Giuseppe, Jacobs, Howard T., Lietzén, Niina, Nyman, Tuula A., Battersby, Brendan J.

Journal:

Current Biology

Year:

2013

Language:

english

File:

PDF, 814 KB

english, 2013

39

New Insights into Staphylococcus aureus Stress Tolerance and Virulence Regulation from an Analysis of the Role of the ClpP Protease in the Strains Newman, COL, and SA564

Frees, Dorte, Andersen, Julie Hove, Hemmingsen, Lene, Koskenniemi, Kerttu, Bæk, Kristoffer T., Muhammed, Musemma Kedir, Gudeta, Dereje Dadi, Nyman, Tuula A., Sukura, Antti, Varmanen, Pekka, Savijoki,

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 3.00 MB

english, 2012

40

Molecular Mechanisms of Selective Estrogen Receptor Modulator Activity in Human Breast Cancer Cells: Identification of Novel Nuclear Cofactors of Antiestrogen–ERα Complexes by Interaction Proteomics

Cirillo, Francesca, Nassa, Giovanni, Tarallo, Roberta, Stellato, Claudia, Filippo, Maria Rosaria De, Ambrosino, Concetta, Baumann, Marc, Nyman, Tuula A., Weisz, Alessandro

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 2.48 MB

english, 2013

41

Comparative Proteome Cataloging of Lactobacillus rhamnosus Strains GG and Lc705

Savijoki, Kirsi, Lietzén, Niina, Kankainen, Matti, Alatossava, Tapani, Koskenniemi, Kerttu, Varmanen, Pekka, Nyman, Tuula A.

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 2.50 MB

english, 2011

42

Compid: A New Software Tool To Integrate and Compare MS/MS Based Protein Identification Results from Mascot and Paragon

Lietzén, Niina, Natri, Lari, Nevalainen, Olli S., Salmi, Jussi, Nyman, Tuula A.

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 2.32 MB

english, 2010

43

Molecular Networks of DYX1C1 Gene Show Connection to Neuronal Migration Genes and Cytoskeletal Proteins

Tammimies, Kristiina, Vitezic, Morana, Matsson, Hans, Le Guyader, Sylvie, Bürglin, Thomas R., Öhman, Tiina, Strömblad, Staffan, Daub, Carsten O., Nyman, Tuula A., Kere, Juha, Tapia-Páez, Isabel

Journal:

Biological Psychiatry

Year:

2013

Language:

english

File:

PDF, 1.11 MB

english, 2013

44

Trichothecene mycotoxins activate NLRP3 inflammasome through a P2X7 receptor and Src tyrosine kinase dependent pathway

Kankkunen, Päivi, Välimäki, Elina, Rintahaka, Johanna, Palomäki, Jaana, Nyman, Tuula, Alenius, Harri, Wolff, Henrik, Matikainen, Sampsa

Journal:

Human Immunology

Year:

2014

Language:

english

File:

PDF, 1.27 MB

english, 2014

45

Netrin-4 Promotes Glioblastoma Cell Proliferation through Integrin β4 Signaling

Hu, Yizhou, Ylivinkka, Irene, Chen, Ping, Li, Li, Hautaniemi, Sampsa, Nyman, Tuula A., Keski-Oja, Jorma, Hyytiäinen, Marko

Journal:

Year:

2012

Language:

english

File:

PDF, 1.86 MB

english, 2012

46

PLATELET ACTIVATION INDUCES TRASCRIPTOME AND PROTEOME REORGANIZATON VIA MODULATION OF MIRNA EXPRESSION PROFILE

Cimmino, Giovanni, Tarallo, Roberta, Nassa, Giovanni, De Filippo, Maria Rosaria, Ravo, Maria, Conte, Stefano, Pellegrino, Grazia, Cirillo, Plinio, Calabro, Paolo, Nyman, Tuula A, Weisz, Alessandro, Go

Journal:

Journal of the American College of Cardiology

Year:

2014

Language:

english

File:

PDF, 506 KB

english, 2014

47

Multistep Phosphorylation by Oncogenic Kinases Enhances the Degradation of the NF2 Tumor Suppressor Merlin

Laulajainen, Minja, Muranen, Taru, Nyman, Tuula A, Carpén, Olli, Grönholm, Mikaela

Journal:

Year:

2011

Language:

english

File:

PDF, 1.03 MB

english, 2011

48

ADHD Candidate Gene Study in a Population-Based Birth Cohort: Association with DBH and DRD2

NYMAN, EMMA S., OGDIE, MATTHEW N., LOUKOLA, ANU, VARILO, TEPPO, TAANILA, ANJA, HURTIG, TUULA, MOILANEN, IRMA K., LOO, SANDRA K., McGOUGH, JAMES J., JÄRVELIN, MARJO-RIITTA, SMALLEY, SUSAN L., NELSON, S

Journal:

Journal of the American Academy of Child & Adolescent Psychiatry

Year:

2007

Language:

english

File:

PDF, 167 KB

english, 2007

49

Infantile neuronal ceroid-lipofuscinosis is not an allelic form of batten disease: Exclusion of chromosome 16 region with linkage analyses

Jokiaho, Irma, Puhakka, Lea, Santavuori, Pirkko, Manninen, Tuula, Nyman, Kristina, Peltonen, Leena

Journal:

Year:

1990

Language:

english

File:

PDF, 301 KB

english, 1990

50

P4-216 Proteomic analysis of glial fibrillary acidic protein in Alzheimer's disease brain

Korolainen, Minna A., Auriola, Seppo, Nyman, Tuula, Alafuzoff, Irina, Pirttilä, Tuula

Journal:

Neurobiology of Aging

Year:

2004

Language:

english

File:

PDF, 323 KB

english, 2004

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